Network-based methods for predicting essential genes or proteins: a survey
… network topological and biological properties. In Dynamic … provide a more comprehensive
gene expression profile. More … Accordingly, identifying the domains that occur within proteins …
gene expression profile. More … Accordingly, identifying the domains that occur within proteins …
[HTML][HTML] A novel essential protein identification method based on PPI networks and gene expression data
J Zhong, C Tang, W Peng, M Xie, Y Sun, Q Tang… - BMC …, 2021 - Springer
… methods for identifying essential proteins have better results by using biological information.
… characterize the probability of two proteins being in a cluster from a topology perspective (2) …
… characterize the probability of two proteins being in a cluster from a topology perspective (2) …
A deep learning framework for gene ontology annotations with sequence-and network-based information
… biological problems and network topological features are very important in the study …
identifying essential proteins based on proteinprotein interaction network and gene expression data…
identifying essential proteins based on proteinprotein interaction network and gene expression data…
Determining protein–protein functional associations by functional rules based on gene ontology and KEGG pathway
… gene expression profiling data [15] or cellular co-localization … that a lot of features were
essential for majority datasets. These … : 0006412 is definitely an effective parameter for identifying …
essential for majority datasets. These … : 0006412 is definitely an effective parameter for identifying …
[HTML][HTML] Glioblastoma gene network reconstruction and ontology analysis by online bioinformatics tools
NV Gubanova, NG Orlova, AI Dergilev… - Journal of integrative …, 2021 - degruyter.com
… sequencing, analysis of gene expression on microarrays, and … Despite the development in
early detection, and treatment, 5-… The study of the structure of the gene network shows a high …
early detection, and treatment, 5-… The study of the structure of the gene network shows a high …
An integrated systems biology and network-based approaches to identify novel biomarkers in breast cancer cell lines using gene expression data
A Khan, Z Rehman, HF Hashmi, AA Khan… - Interdisciplinary …, 2020 - Springer
… Protein–protein interaction network is a very important … the data set of microarray gene
expression and identifying … of PPI and TF network assessment as a powerful structure for gaining …
expression and identifying … of PPI and TF network assessment as a powerful structure for gaining …
Computational methods for identifying the critical nodes in biological networks
X Liu, Z Hong, J Liu, Y Lin… - Briefings in …, 2020 - academic.oup.com
… new essential proteins based on network topology. CEPPK detects new essential proteins by
integrating network … the gene expression data with the static PPI network to build a dynamic …
integrating network … the gene expression data with the static PPI network to build a dynamic …
[HTML][HTML] Deep GONet: self-explainable deep neural network based on Gene Ontology for phenotype prediction from gene expression data
V Bourgeais, F Zehraoui, M Ben Hamdoune… - BMC …, 2021 - Springer
… by identifying the most important neurons and … based on a MLP constrained by the GO
structure. The constraints are introduced into the network using an adaptive regularization term…
structure. The constraints are introduced into the network using an adaptive regularization term…
An effective link-based clustering algorithm for detecting overlapping protein complexes in protein-protein interaction networks
… detect overlapping protein complexes. It first measures the similarity between pairwise
interactions from the perspectives of network topology and Gene Ontology. … form complete protein …
interactions from the perspectives of network topology and Gene Ontology. … form complete protein …
Identifying protein complexes from protein-protein interaction networks based on fuzzy clustering and GO semantic information
… order to complete the task of identifying overlapping protein … consider both of the network
structure and GO, we observed … transcompel®: Transcriptional gene regulation in eukaryotes,…
structure and GO, we observed … transcompel®: Transcriptional gene regulation in eukaryotes,…